jtth + visualization 69
Using Python (and R) to draw a Heatmap from Microarray Data
february 2010 by jtth
[c]
This document follows on from this page which uses R to analyse an Acute lymphocytic leukemia (ALL) microarray dataset, producing a heatmap (with dendrograms) of genes differentially expressed between two types of leukemia. On this page I deal with how to do this using Python and RPy.
r
python
statistics
visualization
This document follows on from this page which uses R to analyse an Acute lymphocytic leukemia (ALL) microarray dataset, producing a heatmap (with dendrograms) of genes differentially expressed between two types of leukemia. On this page I deal with how to do this using Python and RPy.
february 2010 by jtth
NodeBox | Home
november 2009 by jtth
Welcome to NodeBox
NodeBox is a Mac OS X application that lets you create 2D visuals (static, animated or interactive) using Python programming code and export them as a PDF or a QuickTime movie. NodeBox is free and well-documented.
python
graph
programming
visualization
NodeBox is a Mac OS X application that lets you create 2D visuals (static, animated or interactive) using Python programming code and export them as a PDF or a QuickTime movie. NodeBox is free and well-documented.
november 2009 by jtth
Chrome Experiments - Home
august 2009 by jtth
Chrome Experiments Not your mother's JavaScript
demo
experiments
canvas
js
googlechrome
experiment
visualisation
browsers
experimental
browser
chrome
webdesign
visualization
cool
art
web
design
programming
august 2009 by jtth
Orange - Data Mining Fruitful & Fun
july 2009 by jtth
Open source data visualization and analysis for novice and experts. Make your own data analysis schemata by visual programming or Python scripting. Extensions for bioinformatics and text mining. Comprehensive, flexible and fast.
software
visualization
programming
tools
opensource
python
ai
code
research
development
learning
statistics
c++
api
database
algorithms
data
analysis
library
datamining
framework
clustering
machine-learning
machine_learning
classification
machinelearning
mining
data_mining
july 2009 by jtth
F-Shaped Pattern For Reading Web Content (Jakob Nielsen's Alertbox)
july 2009 by jtth
F for fast. That's how users read your precious content. In a few seconds, their eyes move at amazing speeds across your website’s words in a pattern that's very different from what you learned in school.
accessibility
eyetracking
nielsen
reading
ui
marketing
website
patterns
layout
pattern
usability
content
interface
webdev
webdesign
writing
visualization
research
psychology
tips
development
internet
articles
technology
web
interesting
design
reference
article
science
july 2009 by jtth
Oh Snap! Our Step-By-Step Guide To Getting Shot By The Sartorialist -Refinery29 Pipeline-
july 2009 by jtth
You know him. You love him. We do, too. But lest you think it's a snap getting expert Street Style lensman Scott Schuman of Sartorialist fame to spot you on the street, shoot you, AND post your pic on his site…well, think again. In fact, after perusing the past few months' worth of amazing street specimens preening for his expensive camera, we did pick up some interesting sartorial patterns at play. So, want a better shot at, well, getting shot by Scott? Here's our step-by-step guide to increasing the odds...and looking good doing it.
fashion
photography
funny
humor
infographics
style
visualization
fun
sartorialist
july 2009 by jtth
alex dragulescu :: dynamic for the people
july 2009 by jtth
Alex Dragulescu is a Romanian visual artist whose practice embraces both traditional and new media. His projects are experiments and explorations of algorithms, computational models, simulations and information visualizations that involve data derived from databases, spam emails, blogs and video game assets.
software
design
programming
blog
cool
art
computer
data
visualization
technology
information
images
digital
processing
artist
media
experimental
culture
music
portfolio
spam
artists
architecture
code
graphics
inspiration
graphic
newmedia
3d
generative
july 2009 by jtth
aM laboratory
may 2009 by jtth
Simple sinewave synthesizer triggered by an ordinary 16step sequencer. Each triggered step causes a force on the underlaying wave-map, which makes it more cute. Makes me feel like a kid.
sequencer
flash
sound
design
matrix
games
tools
art
tool
synthesizer
game
cool
actionscript
inspiration
web
fun
audio
kids
awesome
visualization
music
interactive
online
tonematrix
tenorion
synth
musica
tone
as3
may 2009 by jtth
Kunal Anand - looks del.icio.us
may 2009 by jtth
The looks del.icio.us project is my first attempt to combine graphics design with programming. The concept is to see how users develop and sustain their tagging methodologies on del.icio.us. I'm not a formal art student or have a computer science degree. I'm just curious.
design
python
beautiful
delicious
brilliant
Tags
information
programming
art
data
mapping
infographics
del.icio.us
tree
maps
web
computer
graph
visual
research
graphs
socialnetworking
visualisation
tagging
visualization
datavisualization
dataviz
tag
may 2009 by jtth
Bootchart
may 2009 by jtth
Bootchart is a tool for performance analysis and visualization of the GNU/Linux boot process. Resource utilization and process information are collected during the boot process and are later rendered in a PNG, SVG or EPS encoded chart.
software
tools
visualization
performance
linux
sysadmin
opensource
boot
may 2009 by jtth
flipping typical
april 2009 by jtth
writes out a phrase in all the fonts installed on your system
tools
web
visualization
design
webdesign
fonts
font
typography
april 2009 by jtth
NPR: Power Hungry: Visualizing The U.S. Electric Grid
april 2009 by jtth
The U.S. electric grid is a complex network of independently owned and operated power plants and transmission lines. Aging infrastructure, combined with a rise in domestic electricity consumption, has forced experts to critically examine the status and health of the nation's electrical systems.
map
visualization
energy
maps
grid
power
electricity
npr
april 2009 by jtth
AuthorMapper - Scientific Research and Author Locations Globally
april 2009 by jtth
AuthorMapper searches journal articles and plots the location of the authors on a map.
science
visualization
research
journals
search
maps
mashup
academic
springer
april 2009 by jtth
Where are the Visualization Tools? | EagerEyes.org
april 2009 by jtth
I got several requests in the last few days about tools for doing visualization and visual analytics. Looking around, I don't see a lot of good, affordable (or free) visualization software. There are lots of papers, but few of those programs are available. And those that are often are of very low quality, very limited in their functionality, and are not being maintained. Please help me collect links to visualization tools that let people with data experience that visualization magic.
software
tools
visualization
directory
applications
infovis
eager
eagereyes
freetools
eyes
infoviz
ping.fm
survey
april 2009 by jtth
well-formed.eigenfactor.org : Visualizing information flow in science
february 2009 by jtth
Interactive visualizations of scientific influence as measured through Eigenfactors.
science
reference
art
design
cool
research
visualization
flash
inspiration
data
academia
information
graphs
beautiful
processing
metrics
citation
networks
publication
infographics
flare
eigenfactor
citations
bibliography
visualisation
mapping
journals
charting
flow
infovis
february 2009 by jtth
patternBrowser
january 2009 by jtth
Interface Design Patterns
gui
ux
ui
hci
information
resources
user
repository
reference
design
web
visualization
interface
usability
graphs
webdev
webdesign
statistics
patterns
january 2009 by jtth
NumberSpiral.com - Home
december 2008 by jtth
Really cool number spiral play.
article
reference
design
art
cool
interesting
tutorial
fun
research
education
math
visualization
Geek
mathematics
algorithms
information
theory
code
learning
number
geometry
patterns
numbers
primes
spirals
december 2008 by jtth
Weka 3 - Data Mining with Open Source Machine Learning Software in Java
software programming tools research opensource development library java statistics learning ai visualization search data algorithm algorithms machine api datamining machine_learning clustering nlp mining weka classification data_mining
december 2008 by jtth
software programming tools research opensource development library java statistics learning ai visualization search data algorithm algorithms machine api datamining machine_learning clustering nlp mining weka classification data_mining
december 2008 by jtth
Maxing out your Triangle — jackcheng.com
november 2008 by jtth
These three things fulfill some of our very basic needs—they give us stability, excitement, ways to contribute and opportunities to grow. If you’re with me so far, then allow me to present exhibit A, the love-growth-cash triangle:
reference
design
cool
tips
interesting
fun
articles
visualization
lifehacks
productivity
work
philosophy
gtd
money
life
project
inspiration
career
reading
graphs
jobs
happiness
lifehack
love
job
charts
triangle
infographics
growth
love-growth-cash
november 2008 by jtth
Flashbulb Interaction | Working through Screens Book
november 2008 by jtth
Working through Screens is a reference for product teams creating new or iteratively improved applications for thinking work. Written for use during early, formative conversations, it provides teams with a broad range of considerations for setting the overall direction and priorities for their onscreen tools. With hundreds of envisioning questions and fictional examples from clinical research, financial trading, and architecture, this volume can help definers and designers to explore innovative new directions for their products.
webdesign
web
visualization
ux
user
usability
ui
tools
userexperience
november 2008 by jtth
Ubigraph: Free dynamic graph visualization software
november 2008 by jtth
Amazing visualization software the interfaces with C, C++, and python, among others.
software
design
programming
tools
free
development
visualization
python
opensource
graphics
c
code
tool
java
library
c++
graphing
3d
api
data
graph
computing
animation
graphs
charts
ruby
haskell
visualisation
november 2008 by jtth
Multicolr Search Lab - Idée Inc.
october 2008 by jtth
We extracted the colours from 10 million of the most “interesting” Creative Commons images on Flickr. Using our visual similarity technology you can navigate the collection by colour. Also available with Alamy Stock Photography. Check out the FAQ. Have feedback?
webdesign
web
visualization
tools
tool
searchengine
search
color
october 2008 by jtth
CAIDA : tools : visualization : walrus
october 2008 by jtth
Walrus is a tool for interactively visualizing large directed graphs in three-dimensional space. It is technically possible to display graphs containing a million nodes or more, but visual clutter, occlusion, and other factors can diminish the effectiveness of Walrus as the number of nodes, or the degree of their connectivity, increases. Thus, in practice, Walrus is best suited to visualizing moderately sized graphs that are nearly trees. A graph with a few hundred thousand nodes and only a slightly greater number of links is likely to be comfortable to work with.
visualisation
walrus
hyperbolic
java3d
visualization
information
networks
graphs
library
network
opensource
software
science
design
programming
tools
cool
research
graphics
database
graph
java
3d
mapping
datamining
analysis
october 2008 by jtth
Ten Thousand Cents
september 2008 by jtth
"Ten Thousand Cents" is a digital artwork that creates a representation of a $100 bill. Using a custom drawing tool, thousands of individuals working in isolation from one another painted a tiny part of the bill without knowledge of the overall task. Workers were paid one cent each via Amazon's Mechanical Turk distributed labor tool. The total labor cost to create the bill, the artwork being created, and the reproductions available for purchase are all $100. The work is presented as a video piece with all 10,000 parts being drawn simultaneously. The project explores the circumstances we live in, a new and uncharted combination of digital labor markets, "crowdsourcing," "virtual economies," and digital reproduction.
design
art
interesting
web
technology
development
web2.0
money
project
collaborative
amazon
distributed
community
visualization
mechanicalturk
crowdsourcing
experimental
september 2008 by jtth
Wanderlust: GOOD traces the most famous trips in history
august 2008 by jtth
Maps of the most famous journeys of history.
design
cool
education
history
visualization
flash
writing
magazine
literature
world
map
Travel
inspiration
charts
adventure
geography
good
interactive
maps
travels
exploration
expedition
cartography
historical
august 2008 by jtth
The Periodic Table of Videos - University of Nottingham
science reference cool interesting tutorial video fun visualization history education academic youtube resources teaching tutorials videos online elements periodic chemistry film table periodictable periodic_table school geek elearning
august 2008 by jtth
science reference cool interesting tutorial video fun visualization history education academic youtube resources teaching tutorials videos online elements periodic chemistry film table periodictable periodic_table school geek elearning
august 2008 by jtth
Flare | Data Visualization for the Web
august 2008 by jtth
Flare is an ActionScript library for creating visualizations that run in the Adobe Flash Player. From basic charts and graphs to complex interactive graphics, the toolkit supports data management, visual encoding, animation, and interaction techniques. Even better, flare features a modular design that lets developers create customized visualization techniques without having to reinvent the wheel.
actionscript
prefuse
flare
visualization
flash
graphics
code
webdesign
framework
api
information
data
library
chart
graphs
adobe
charts
flex
software
design
programming
tools
web
development
opensource
august 2008 by jtth
NodeBox | Home
may 2008 by jtth
NodeBox is a Mac OS X application that lets you create 2D visuals (static, animated or interactive) using Python programming code and export them as a PDF or a QuickTime movie. NodeBox is free and well-documented. (linked via http://www.macresearch.org/no
python
programming
visualization
network
design
may 2008 by jtth
Main Page - Emergent
february 2008 by jtth
Emergent (a major rewrite of PDP++) is a comprehensive simulation environment for creating complex, sophisticated models of the brain and cognitive processes using neural network models. These same networks can also be used for all kinds of other more pra
simulator
neural_networks
ai
neural
modeling
network
software
3d
research
analysis
artificial
emergency
source
tool
imported
visualization
intelligence
library
math
neuralnetworks
neuroscience
nn
open
pdp
february 2008 by jtth
JUST VISION
february 2008 by jtth
A visual representation of the ongoing Arab-Israeli conflict.
culture
encyclopedia
flash
history
timeline
visual
visualization
palestine
israel
february 2008 by jtth
NetworkX
python graph visualization network programming library opensource algorithms analysis api code complex computer computerscience framework freeware graphic graphics graphing image graphs interesting research reference science networks modeling computing networking visual useful theory mathematics links statistics tech trace software libraries layout
february 2008 by jtth
python graph visualization network programming library opensource algorithms analysis api code complex computer computerscience framework freeware graphic graphics graphing image graphs interesting research reference science networks modeling computing networking visual useful theory mathematics links statistics tech trace software libraries layout
february 2008 by jtth
Fictional radio-spaces · Touch
december 2007 by jtth
In this project called “the bubbles of radio” Ingeborg Marie Dehs Thomas used critical, visual design as a way of exploring the perception of many kinds of electromagnetic fields. The project answered the brief Fields and Seams that asks “How can we
design
radio
art
visualization
rfid
electromagnetic
electronics
space
graphic
sound
illustration
wireless
wifi
bluetooth
map
drawing
december 2007 by jtth
Musicovery : interactive webRadio
december 2007 by jtth
Fucking brilliant. Full-length songs (at not the best quality, but bearable) targeted through some rather abstract metrics.
music
radio
streaming
audio
web2.0
flash
cool
semantic
mashup
internet
interface
recommendations
search
song
sound
station
stream
visualization
interesting
interactive
database
design
discovery
awesome
december 2007 by jtth
Sparkline PHP Graphing Library
december 2007 by jtth
Sparklines are "intense, simple, wordlike graphics" so named by Edward Tufte. In lieu of a more detailed introduction, Professor Tufte's site has an early release of a chapter on sparklines.
php
sparklines
visualization
graphics
programming
tufte
web
utilities
usability
webdev
website
tool
analysis
communication
cool
informatics
mathematics
math
methods
plugins
presentation
services
scripting
script
december 2007 by jtth
Create A Graph
december 2007 by jtth
?Graphs and charts are great because they communicate information visually. For this reason, graphs are often used in newspapers, magazines and businesses around the world. NCES constantly uses graphs and charts in our publications and on the web. Sometim
math
graphs
graph
Tools
Education
interactive
graphing
wizard
visualization
december 2007 by jtth
Processing 1.0 (BETA)
november 2007 by jtth
Processing is an open source programming language and environment for people who want to program images, animation, and interactions. It is used by students, artists, designers, researchers, and hobbyists for learning, prototyping, and production. It is c
processing
programming
language
data
visualization
november 2007 by jtth
InfoVis CyberInfrastructure- Software
october 2007 by jtth
This page provides pointers to commonly used data analysis and visualization algorithms. An 'IVC Software Framework' was implemented to facilitate the easy integration of diverse software packages and their menu driven usage. Many software packages are av
visualization
software
tools
java
graph
design
information
viz
technology
tool
math
net
network
code
cs
data
free
development
research
reference
programming
academia
3d
october 2007 by jtth
Icastic - visualizing time
october 2007 by jtth
Drawings, with uberstatistics, of how people report visualizing time.
time
visualization
drawing
design
timeline
ideas
art
abstract
cogsci
inspiration
people
resource
blog
collaborative
todo
concept
data
conceptual
viz
english
info
october 2007 by jtth
History of Religion
october 2007 by jtth
How has the geography of religion evolved over the centuries, and where has it sparked wars? Our map gives us a brief history of the world's most well-known religions: Christianity, Islam, Hinduism, Buddhism, and Judaism. Selected periods of inter-religio
religion
history
maps
flash
map
video
reference
war
visualization
videos
Multimedia
politics
presentation
society
sociology
stats
teaching
time
geography
culture
world
october 2007 by jtth
ANT Censuses of the Internet Address Space
october 2007 by jtth
Starting in 2003, researchers at ISI have been collecting data about the Internet address space. As part of this work we have been probing all addresses in the allocated Internet address space. This web page summarizes this research, the datasets, and rel
address
map
network
research
space
visualization
Internet
october 2007 by jtth
SciPy -
september 2007 by jtth
SciPy (pronounced "Sigh Pie") is open-source software for mathematics, science, and engineering. It is also the name of a very popular conference on scientific programming with Python.
academia
application
code
coding
compsci
computation
computer
computers
computing
cs
lab
graphing
graphic
graph
freeware
free
framework
extension
engineering
developer
language
libraries
library
math
mathematics
maths
matrix
modeling
number
numbers
open
open-source
opensource
optimization
oss
package
plot
programming
python
research
resources
science
scientific
visualization
work
scripting
software
source
statistic
statistics
stats
tutorials
tools
september 2007 by jtth
Election 2004 Results
september 2007 by jtth
Maps of elections since 1960.
politics
election
Maps
visualization
map
election2004
usa
voting
america
image
analysis
history
culture
democracy
elections
geography
government
graphics
US
statistics
society
interesting
information
september 2007 by jtth
A Periodic Table of Visualization Methods
april 2007 by jtth
A huge collection of data visualization methods.
periodic
table
visualization
method
methods
data
viz
render
reference
april 2007 by jtth
Seed: Science In Silico
april 2007 by jtth
Computer simulations and visualizations are performing the thought experiments of the 21st century and pushing the limits of human vision and imagination.
science
visualization
computational
computation
computer
simulation
simulate
seed
video
april 2007 by jtth
Optical Illusions and Visual Phenomena
march 2007 by jtth
Awesome visual illusions.
cogsci
cognitive
science
illusion
fun
illusions
cool
Art
optical
animation
article
test
vision
visualization
pictures
Psychology
image
march 2007 by jtth
FileBrowse
october 2006 by jtth
Finder alternative.
cool
images
software
sysadmin
ui
visualization
tools
productivity
media
macosx
design
OsX
Mac
finder
october 2006 by jtth
Scapy
august 2006 by jtth
Scapy is a powerful interactive packet manipulation program. It is able to forge or decode packets of a wide number of protocols, send them on the wire, capture them, match requests and replies, and much more
computer
crack
development
freeware
firewall
Geek
hack
hacking
howto
infosec
internet
network
networking
open-source
pentest
opensource
work
wireless
visualization
unix
tutorial
tools
tips
technology
sysadmin
software
Security
research
programming
python
packet
tool
august 2006 by jtth
Imagining the Tenth Dimension - A Book by Rob Bryanton
july 2006 by jtth
A mind-bending journing into m-theory, string theory, and a good visual primer into dimensionality.
animation
awesome
book
cool
flash
fun
Geek
humor
funny
interesting
math
image
mathematics
maths
philosophy
reference
physics
relativity
science
space
time
videos
visualization
weird
july 2006 by jtth
der-mo.net _ Moritz Stefaner
february 2006 by jtth
The CIA World factbook as visualized through a relational browser.
browser
cool
reference
social
tools
design
web
facts
english
web2.0
webdev
flash
world
intelligence
howto
interesting
internet
navigation
network
politics
maps
visualization
february 2006 by jtth
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