cshalizi + functional_connectivity 27
Multiple dynamic representations in the motor cortex during sensorimotor learning : Nature : Nature Publishing Group
4 weeks ago by cshalizi
"The mechanisms linking sensation and action during learning are poorly understood. Layer 2/3 neurons in the motor cortex might participate in sensorimotor integration and learning; they receive input from sensory cortex and excite deep layer neurons, which control movement. Here we imaged activity in the same set of layer 2/3 neurons in the motor cortex over weeks, while mice learned to detect objects with their whiskers and report detection with licking. Spatially intermingled neurons represented sensory (touch) and motor behaviours (whisker movements and licking). With learning, the population-level representation of task-related licking strengthened. In trained mice, population-level representations were redundant and stable, despite dynamism of single-neuron representations. The activity of a subpopulation of neurons was consistent with touch driving licking behaviour. Our results suggest that ensembles of motor cortex neurons couple sensory input to multiple, related motor programs during learning."
to:NB
learning_theory
neuroscience
functional_connectivity
experimental_biology
4 weeks ago by cshalizi
"Neural reuse: A fundamental organizational principle of the brain" (Anderson, 2010)
10 weeks ago by cshalizi
BBS target article.
Abstract: "An emerging class of theories concerning the functional structure of the brain takes the reuse of neural circuitry for various cognitive purposes to be a central organizational principle. According to these theories, it is quite common for neural circuits established for one purpose to be exapted (exploited, recycled, redeployed) during evolution or normal development, and be put to different uses, often without losing their original functions. Neural reuse theories thus differ from the usual understanding of the role of neural plasticity (which is, after all, a kind of reuse) in brain organization along the following lines: According to neural reuse, circuits can continue to acquire new uses after an initial or original function is established; the acquisition of new uses need not involve unusual circumstances such as injury or loss of established function; and the acquisition of a new use need not involve (much) local change to circuit structure (e.g., it might involve only the establishment of functional connections to new neural partners). Thus, neural reuse theories offer a distinct perspective on several topics of general interest, such as: the evolution and development of the brain, including (for instance) the evolutionary-developmental pathway supporting primate tool use and human language; the degree of modularity in brain organization; the degree of localization of cognitive function; and the cortical parcellation problem and the prospects (and proper methods to employ) for function to structure mapping. The idea also has some practical implications in the areas of rehabilitative medicine and machine interface design."
in_NB
to_read
fmri
neuroscience
functional_connectivity
modularity
re:functional_communities
neuropsychology
cognitive_science
Abstract: "An emerging class of theories concerning the functional structure of the brain takes the reuse of neural circuitry for various cognitive purposes to be a central organizational principle. According to these theories, it is quite common for neural circuits established for one purpose to be exapted (exploited, recycled, redeployed) during evolution or normal development, and be put to different uses, often without losing their original functions. Neural reuse theories thus differ from the usual understanding of the role of neural plasticity (which is, after all, a kind of reuse) in brain organization along the following lines: According to neural reuse, circuits can continue to acquire new uses after an initial or original function is established; the acquisition of new uses need not involve unusual circumstances such as injury or loss of established function; and the acquisition of a new use need not involve (much) local change to circuit structure (e.g., it might involve only the establishment of functional connections to new neural partners). Thus, neural reuse theories offer a distinct perspective on several topics of general interest, such as: the evolution and development of the brain, including (for instance) the evolutionary-developmental pathway supporting primate tool use and human language; the degree of modularity in brain organization; the degree of localization of cognitive function; and the cortical parcellation problem and the prospects (and proper methods to employ) for function to structure mapping. The idea also has some practical implications in the areas of rehabilitative medicine and machine interface design."
10 weeks ago by cshalizi
Neural Reuse in the Functional Organization of the Brain
10 weeks ago by cshalizi
"Abstract: 20 years after the birth of neuroimaging, we have the exciting opportunity to review the accumulated evidence, and revisit some fundamental assumptions about the functional organization of the brain. The current talk will focus on the issue of selectivity, and present evidence suggesting that local neural circuits are in fact used to support multiple tasks across diverse task categories–but that they cooperate with different neural partners in each category.
"Overall, the imaging data suggest a story about the evolution and development of the brain whereby new function emerges via the reuse and reconfiguration of existing neural machinery, leaving existing uses largely intact. In addition to reviewing the evidence from neuroimaging, I will discuss in some detail one specific instance of apparent reuse: the involvement of a local neural circuit in finger awareness, number representation, and other diverse functions.
"Specific implications for numerical cognition, and general implications for anatomical and functional modularity will be considered."
Unfortunately, I'm going to be missing the talk...
track_down_references
neuroscience
cognitive_science
fmri
functional_connectivity
modularity
re:functional_communities
"Overall, the imaging data suggest a story about the evolution and development of the brain whereby new function emerges via the reuse and reconfiguration of existing neural machinery, leaving existing uses largely intact. In addition to reviewing the evidence from neuroimaging, I will discuss in some detail one specific instance of apparent reuse: the involvement of a local neural circuit in finger awareness, number representation, and other diverse functions.
"Specific implications for numerical cognition, and general implications for anatomical and functional modularity will be considered."
Unfortunately, I'm going to be missing the talk...
10 weeks ago by cshalizi
Emergence of Stable Functional Networks in Long-Term Human Electroencephalography
february 2012 by cshalizi
"Functional connectivity networks have become a central focus in neuroscience because they reveal key higher-dimensional features of normal and abnormal nervous system physiology. Functional networks reflect activity-based coupling between brain regions that may be constrained by relatively static anatomical connections, yet these networks appear to support tremendously dynamic behaviors. Within this growing field, the stability and temporal characteristics of functional connectivity brain networks have not been well characterized. We evaluated the temporal stability of spontaneous functional connectivity networks derived from multi-day scalp encephalogram (EEG) recordings in five healthy human subjects. Topological stability and graph characteristics of networks derived from averaged data epochs ranging from 1 s to multiple hours across different states of consciousness were compared. We show that, although functional networks are highly variable on the order of seconds, stable network templates emerge after as little as ∼100 s of recording and persist across different states and frequency bands (albeit with slightly different characteristics in different states and frequencies). Within these network templates, the most common edges are markedly consistent, constituting a network “core.” Although average network topologies persist across time, measures of global network connectivity, density and clustering coefficient, are state and frequency specific, with sparsest but most highly clustered networks seen during sleep and in the gamma frequency band. These findings support the notion that a core functional organization underlies spontaneous cortical processing and may provide a reference template on which unstable, transient, and rapidly adaptive long-range assemblies are overlaid in a frequency-dependent manner."
to:NB
re:network_differences
functional_connectivity
neuroscience
february 2012 by cshalizi
Phys. Rev. E 85, 011912 (2012): Interrelating anatomical, effective, and functional brain connectivity using propagators and neural field theory
february 2012 by cshalizi
"It is shown how to compute effective and functional connection matrices (eCMs and fCMs) from anatomical CMs (aCMs) and corresponding strength-of-connection matrices (sCMs) using propagator methods in which neural interactions play the role of scatterings. This analysis demonstrates how network effects dress the bare propagators (the sCMs) to yield effective propagators (the eCMs) that can be used to compute the covariances customarily used to define fCMs. The results incorporate excitatory and inhibitory connections, multiple structures and populations, asymmetries, time delays, and measurement effects. They can also be postprocessed in the same manner as experimental measurements for direct comparison with data and thereby give insights into the role of coarse-graining, thresholding, and other effects in determining the structure of CMs. The spatiotemporal results show how to generalize CMs to include time delays and how natural network modes give rise to long-range coherence at resonant frequencies. The results are demonstrated using tractable analytic cases via neural field theory of cortical and corticothalamic systems. These also demonstrate close connections between the structure of CMs and proximity to critical points of the system, highlight the importance of indirect links between brain regions and raise the possibility of imaging specific levels of indirect connectivity. Aside from the results presented explicitly here, the expression of the connections among aCMs, sCMs, eCMs, and fCMs in terms of propagators opens the way for propagator theory to be further applied to analysis of connectivity."
to:NB
neuroscience
field_theory
functional_connectivity
effective_connectivity
stochastic_processes
february 2012 by cshalizi
Higher-Order Interactions Characterized in Cortical Activity
december 2011 by cshalizi
"In the cortex, the interactions among neurons give rise to transient coherent activity patterns that underlie perception, cognition, and action. Recently, it was actively debated whether the most basic interactions, i.e., the pairwise correlations between neurons or groups of neurons, suffice to explain those observed activity patterns. So far, the evidence reported is controversial. Importantly, the overall organization of neuronal interactions and the mechanisms underlying their generation, especially those of high-order interactions, have remained elusive. Here we show that higher-order interactions are required to properly account for cortical dynamics such as ongoing neuronal avalanches in the alert monkey and evoked visual responses in the anesthetized cat. A Gaussian interaction model that utilizes the observed pairwise correlations and event rates and that applies intrinsic thresholding identifies those higher-order interactions correctly, both in cortical local field potentials and spiking activities. This allows for accurate prediction of large neuronal population activities as required, e.g., in brain–machine interface paradigms. Our results demonstrate that higher-order interactions are inherent properties of cortical dynamics and suggest a simple solution to overcome the apparent formidable complexity previously thought to be intrinsic to those interactions."
to:NB
neuroscience
functional_connectivity
re:friday_cat-blogging
december 2011 by cshalizi
Functionally Specific Changes in Resting-State Sensorimotor Networks after Motor Learning
november 2011 by cshalizi
"Motor learning changes the activity of cortical motor and subcortical areas of the brain, but does learning affect sensory systems as well? We examined in humans the effects of motor learning using fMRI measures of functional connectivity under resting conditions and found persistent changes in networks involving both motor and somatosensory areas of the brain. We developed a technique that allows us to distinguish changes in functional connectivity that can be attributed to motor learning from those that are related to perceptual changes that occur in conjunction with learning. Using this technique, we identified a new network in motor learning involving second somatosensory cortex, ventral premotor cortex, and supplementary motor cortex whose activation is specifically related to perceptual changes that occur in conjunction with motor learning. We also found changes in a network comprising cerebellar cortex, primary motor cortex, and dorsal premotor cortex that were linked to the motor aspects of learning. In each network, we observed highly reliable linear relationships between neuroplastic changes and behavioral measures of either motor learning or perceptual function. Motor learning thus results in functionally specific changes to distinct resting-state networks in the brain."
to:NB
neuroscience
fmri
functional_connectivity
november 2011 by cshalizi
Foundational Issues in Human Brain Mapping - The MIT Press
april 2010 by cshalizi
"The contributors address both statistical and dynamical analysis and modeling of neuroimaging data and interpretation, discussing localization, modularity, and neuroimagers' tacit assumptions about how these two phenomena are related; controversies over correlation of fMRI data and social attributions (recently characterized for good or ill as "voodoo correlations"); and the standard inferential design approach in neuroimaging. Finally, the contributors take a more philosophical perspective, considering the nature of measurement in brain imaging, and offer a framework for novel neuroimaging data structures (effective and functional connectivity—"graphs")."
fmri
functional_connectivity
statistics
books:noted
april 2010 by cshalizi
[1002.0697] Complex networks: new trends for the analysis of brain connectivity
february 2010 by cshalizi
"Electroencephalography, magnetoencephalography, or functional magnetic resonance imaging techniques provide functional connectivity patterns between different brain areas, and during different pathological and cognitive neuro-dynamical states. In this Tutorial we review novel complex networks approaches to unveil how brain networks can efficiently manage local processing and global integration for the transfer of information, while being at the same time capable of adapting to satisfy changing neural demands."
re:functional_communities
functional_connectivity
networks
neuroscience
to_read
february 2010 by cshalizi
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