Systems Biology - A Probability-based Approach for the Analysis of Large-scale RNAi Screens
4 weeks ago by arthegall
Evaluating hits in RNAi screens with replicates and multiple RNAs per gene. (Mmmmmfff. This seems rife for bugs, errors, weirdness.)
rnai
bioinformatics
software
screening
statistics
4 weeks ago by arthegall
James Whittaker, "Why I Left Google"
10 weeks ago by arthegall
I'm not suggesting that what he's saying is wrong (and I didn't want to work at Google because it seemed like some of the things he describes in his essay were obviously true "from the outside," during the interview process), but -- this mostly makes me think that "rage quitting" is becoming an art-form.
I think this applies equally well to the NYT op-ed from the guy who rage-quit Goldman Sachs.
rage-quit
james-whittaker
google
quitting
software
via:chl
I think this applies equally well to the NYT op-ed from the guy who rage-quit Goldman Sachs.
10 weeks ago by arthegall
Index of /gnu/tar/
february 2012 by arthegall
For installing socket.io with npm on some ... old systems.
socket.io
npm
node
gnu
tar
installation
linux
weird
software
programming
tool
february 2012 by arthegall
openplanets/fido - GitHub
february 2012 by arthegall
The CTO of Ingenuity asked me last week, if there was something like this tool but for bioinformatics file formats. No... but there probably could be. There definitely *should* be.
work
ingenuity
bioinformatics
file-format
tool
software
github
february 2012 by arthegall
Interactive CCmaps
december 2011 by arthegall
"Conditioned Choropleth Maps"
choropleth
mapping
data
software
visualization
december 2011 by arthegall
Giraph (Apache Incubator)
december 2011 by arthegall
Hadoop+Pregel based graph-processing library. Grew out of someone's GSoC project, I think.
graph
hadoop
apache
software
december 2011 by arthegall
LABjs Script Loader :: Home
december 2011 by arthegall
"The core purpose of LABjs is to be an all-purpose, on-demand JavaScript loader, capable of loading any JavaScript resource, from any location, into any page, at any time. Loading your scripts with LABjs reduces resource blocking during page-load, which is an easy and effective way to optimize your site's performance."
javascript
loader
programming
web
library
software
optimization
december 2011 by arthegall
yepnope.js | A Conditional Loader For Your Polyfills!
december 2011 by arthegall
Async conditional polyfill loader.
polyfills
javascript
programming
web
library
software
loader
december 2011 by arthegall
DAGitty v1.0
october 2011 by arthegall
"A graphical tool for analyzing causal diagrams."
graphical-models
causality
software
tool
october 2011 by arthegall
Nux
august 2011 by arthegall
Java library from LBL, for evaluating XQuery programs (among other things). Need to check the license. Looks like it has a chance to be reasonably modern and fast.
xquery
software
library
xml
query-language
august 2011 by arthegall
RDKit
august 2011 by arthegall
Whoa -- did *not* realize that Greg Landrum was (also) "The RDKit guy."
cheminformatics
machinelearning
greg-landrum
software
library
python
opensource
august 2011 by arthegall
Vagrant - Welcome
august 2011 by arthegall
Command-line easy-interface tools for creating virtual machine images, on top of VirtualBox.
virtual-machine
software
tool
virtualization
deployment
august 2011 by arthegall
The Architecture of Open Source Applications
july 2011 by arthegall
And hey, Adam wrote chapter 13! Nice!
via:arsyed
software
engineering
book
opensource
programming
july 2011 by arthegall
andreasgal/pdf.js - GitHub
june 2011 by arthegall
Native PDF viewing in Javascript.
via:sbma44
pdf
javascript
web
software
canvas
june 2011 by arthegall
Libxmljs - GitHub
june 2011 by arthegall
libxml2-based parsing and XML creation, in Javascript, for node. A quick overview of the listed XML-related modules on the NPM module page seemed to imply that this was going to be the most likely to be updated, to have the features I want, and to work.
node
xml
library
software
git
june 2011 by arthegall
Partek Incorporated | Next Generation Sequencing Software
june 2011 by arthegall
Commercial software for NGS analysis. Listing software here so I know what external alternatives my (internal) customers might choose to buy, instead of using what we're writing for them for free.
bioinformatics
software
commercial-software
sequencing
sequence-analysis
genomics
ngs
june 2011 by arthegall
Li et al. "The Sequence Alignment/Map format and SAMtools" (Bioinformatics, 2009)
may 2011 by arthegall
(doi:10.1093/bioinformatics/btp352)
bioinformatics
samtools
bam-file-format
software
research-article
may 2011 by arthegall
hpricot/hpricot - GitHub
may 2011 by arthegall
Ruby-based HTML parser. Also cf. http://hpricot.com/
parser
html
web
software
ruby
may 2011 by arthegall
Home | www.broadinstitute.org/software/scripture
may 2011 by arthegall
Yet another "transcript recovery from NGS" software package.
transcription
genomics
broad-institute
software
tophat
bioinformatics
may 2011 by arthegall
Integrative Genomics Viewer
may 2011 by arthegall
The Broad's Java-based thick-client for genome visualization.
genomics
visualization
data
broad-institute
software
may 2011 by arthegall
OSQA | The Open Source Q&A System
april 2011 by arthegall
Django-based Question-and-answer site. Stack-exchange-ey.
stack-exchange
django
opensource
python
web
questions
software
collaboration
april 2011 by arthegall
stompj - Stomp client for Java - Google Project Hosting
april 2011 by arthegall
STOMP client -- apparently, ActiveMQ can be a STOMP server.
stomp
message-queue
work
java
software
apache-license
open-source
april 2011 by arthegall
QIIME: Quantitative Insights Into Microbial Ecology — Homepage
march 2011 by arthegall
Microbial ecology and biology through deep-sequencing toolkit
tool
bioinformatics
software
microbes
ecology
genomics
march 2011 by arthegall
Apache Felix - Index
february 2011 by arthegall
"Apache Felix is a community effort to implement the OSGi R4 Service Platform and other interesting OSGi-related technologies under the Apache license."
osgi
java
apache
programming
library
software
february 2011 by arthegall
DataImportHandler - Solr Wiki
february 2011 by arthegall
"Most applications store data in relational databases or XML files and searching over such data is a common use-case. The DataImportHandler is a Solr contrib that provides a configuration driven way to import this data into Solr in both "full builds" and using incremental delta imports."
solr
software
lucene
import
etl
data
database
jdbc
february 2011 by arthegall
jquery-jsonp - Project Hosting on Google Code
february 2011 by arthegall
"Precise control over callback naming..." for people who *insist* on defining their own callback parameters. *SIGH*.
javascript
json
jsonp
ajax
jquery
plugin
software
why-cant-you-people-stick-to-convention
february 2011 by arthegall
Welcome to Eclim - eclim (eclipse + vim)
january 2011 by arthegall
Calling a headless Eclipse from vim? Whoa.
eclipse
vim
programming
tutorial
software
tool
java
from delicious
january 2011 by arthegall
elda - Project Hosting on Google Code
january 2011 by arthegall
Linked-Data-in-Java. The jury's still out (for me) on how useful this kind of thing is, but maybe it's a good idea to accumulate a few implementations.
java
linked-data
google-code
opensource
library
software
january 2011 by arthegall
PoDoFo
january 2011 by arthegall
Another PDF parsing and extraction library, this one in C++.
c++
pdfs
parsing
library
software
opensource
from delicious
january 2011 by arthegall
COIN-OR
january 2011 by arthegall
Open source "industrial strength" linear and integer programming.
linear-programming
integer-programming
software
tool
opensource
from delicious
january 2011 by arthegall
Paperpile
january 2011 by arthegall
Open source paper management software, written for Linux and OS X, by Bob's officemate. The beta looks *great*. Right now I'm importing the reference info for the huge pile of PDFs I've got sitting on my hard drive...
references
citations
bibtex
software
tool
awesome
via:raltshuler
from delicious
january 2011 by arthegall
OBO to SKOS (Simon Jupp - The University of Manchester)
january 2011 by arthegall
Okay... but why? SKOS is like OWL-without-inference, so converting an ontological format (e.g. OBO) into SKOS seems like it misses the point.
ontologies
semanticweb
skos
obo
question
converter
software
from delicious
january 2011 by arthegall
Main Page - Open Babel
january 2011 by arthegall
"Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas." -- Includes a parser/filter engine for SMARTS expressions.
smarts
structure
bioinformatics
chemoinformatics
chemistry
software
opensource
molecular-modeling
from delicious
january 2011 by arthegall
Interactive Biosoftware - Practical software for bioscientists
december 2010 by arthegall
This looks kinda bespoke (have I mentioned how 'bespoke' is my new favorite word?) and ad hoc, but ... mentioned during the Clinical Bioinformatics Seminar two weeks ago.
bioinformatics
software
tool
mutations
genetics
variation
genomics
december 2010 by arthegall
Houdini Mechanical Turk API
november 2010 by arthegall
"Houdini is an API that makes interacting with Mechanical Turk a breeze."
houdini
mechanical-turk
api
library
software
interface
middle-layer
november 2010 by arthegall
Frink
november 2010 by arthegall
Unit-conversion-software on steroids. Sorry, did I say "software?" I meant, "full-on embedded language." And maybe "on steroids" is too weak a metaphor -- more like, "on crack, riding a jet-powered motorcycle, blasting death-metal from concert-grade speakers mounted on its exhaust-pipes." Sure, it does unit-conversion. It also has a graphics layer built in ("graphics can be specified with explicit lengths (such as '3 cm',) so exactly-sized drawings can be printed"), has its own object-oriented class framework, includes an embedded language for invoking Java code (through introspection), currency conversion that fetches live data from the Bureau of Labor Statistics (!!), a web interface layer, arbitrary-precision mathematics included, and ... a kitchen sink? Still completely awesome though.
frink
simpsons
software
conversion
awesome
via:alanr
november 2010 by arthegall
The Kappa Language
november 2010 by arthegall
"A rule-based language for modeling protein interaction networks" -- used by the Edinburgh iGem team, modeling light-sensitive bacteria.
modeling-language
protein-interactions
language
stochastic-grammar
software
tool
biology
synthetic-biology
november 2010 by arthegall
Open Context: Data Publication for Cultural Heritage and Field Research
september 2010 by arthegall
"Open Context is a free, open access resource for the electronic publication of primary field research from archaeology and related disciplines."
open-context
archaeology
data
data-publishing
software
web
september 2010 by arthegall
Maven Repository: Search/Browse/Explore
september 2010 by arthegall
Maven 2 repository, "used by default by Apache Ivy."
ivy
apache
software
dependencies
tool
repository
programming
september 2010 by arthegall
ORDF Python Library
september 2010 by arthegall
Thinking about abstracting over different RDF triple-stores is probably a useful thing. Python still seems to lag behind Java though, in its support for inference-in-RDF.
inference
python
ordf
rdf
semanticweb
library
software
rdflib
4store
database
september 2010 by arthegall
LizardTech - Developer Program Homepage
september 2010 by arthegall
C++ libraries for decoding "MrSID" image files.
mrsid
geography
gis
software
proprietary-software
multi-resolution-images
programming
personal
september 2010 by arthegall
Apache Ivy
september 2010 by arthegall
Dependency management, integrated with ant.
ant
build
programming
software
ivy
apache
opensource
september 2010 by arthegall
jsonschema - Project Hosting on Google Code
september 2010 by arthegall
JSON Schema validator in Javascript. Doesn't look like it'd be too hard to port.
json
json-schema
validator
software
google-code
work
september 2010 by arthegall
Eyeball
september 2010 by arthegall
Jena plugin for RDF validation.
jena
programming
rdf
validation
data
java
library
software
semanticweb
september 2010 by arthegall
wavii's pfp at master - GitHub
september 2010 by arthegall
pfp == "pretty fast parser." (== "like the Stanford NLP parser, but faster") Now all I need is a JavaCC grammar for JavaCC grammars, and we'll be good to go, right?
parsing
grammar
dynamic-programming
software
tool
opensource
nlp
language
september 2010 by arthegall
A Software License Agreement Takes it On the Chin | Freedom to Tinker
september 2010 by arthegall
"Interestingly, Wikipedia notes that the Brits broadly distrust the concept of gross negligence and that, as far back as 1843, in Wilson v. Brett, Baron Rolfe 'could see no difference between negligence and gross negligence; that it was the same thing, with the addition of a vituperative epithet.'"
law
humor
language
negligence
software
license-agreements
eula
quote
september 2010 by arthegall
openscholar
july 2010 by arthegall
"A full-featured web site-creation package solely for the academic community. Scholars create web sites in seconds and can easily manage everything themselves (for free)" -- yet another Drupal-based system for "community creation." (YADSCC.)
drupal
education
academia
research
software
web
community
cms
opensource
july 2010 by arthegall
"Apple as religious experience" (kottke)
july 2010 by arthegall
"But say I could repent, and could obtain,
By act of grace, a MacBook Pro; how soon
Would highth recall high thoughts, how soon unsay
What feigned submission swore? Ease would recant
Vows made in Vista, as violent and void.
For never can true reconcilement grow,
Where wounds of deadly hate have pierced so deep:
Which would but lead me to a worse relapse
And heavier fall: so should I purchase dear
A new smart phone bought with double smart (and $400).
This knows Steve Jobs; therefore as far
From granting he, as I from begging, peace;
All hope excluded thus, behold, in stead
Of us out-cast, exil'd, his new delight,
iPad created, and for him this world.
So farewell, hope; and with hope farewell, fear;
Farewell, touch screen! AppStore to me is lost;
Android, be thou my good; by thee at least
Divided empire with Heaven's CEO I hold..."
apple
software
milton
humor
ipad
iphone
hells-bells
satan
fvck-you-clown
By act of grace, a MacBook Pro; how soon
Would highth recall high thoughts, how soon unsay
What feigned submission swore? Ease would recant
Vows made in Vista, as violent and void.
For never can true reconcilement grow,
Where wounds of deadly hate have pierced so deep:
Which would but lead me to a worse relapse
And heavier fall: so should I purchase dear
A new smart phone bought with double smart (and $400).
This knows Steve Jobs; therefore as far
From granting he, as I from begging, peace;
All hope excluded thus, behold, in stead
Of us out-cast, exil'd, his new delight,
iPad created, and for him this world.
So farewell, hope; and with hope farewell, fear;
Farewell, touch screen! AppStore to me is lost;
Android, be thou my good; by thee at least
Divided empire with Heaven's CEO I hold..."
july 2010 by arthegall
"Why WordPress Themes are Derivative of WordPress" (Mark on WordPress)
july 2010 by arthegall
For all the sound and fury about this GPL-vs-Wordpress-plugin-author mess, why do I feel as if this sentence -- "If modules are designed to run linked together in a shared address space..." -- is actually the crux of the argument? None of the other mess about "common language," or "uses an API," or "intended to work together," actually functions as a bright line. To my eye, this is the only reasonable proposal that's actually been made for differentiating derivative vs. non-derivative software with different origins (no surprise that it's from the FSF, who ostensibly know what they're talking about) -- although technically, that's not the case here, since some of the Thesis code is actually copied from WP, meaning it's pretty clearly "derivative." Now, given that it's the only reasonable proposal put forward, the next question is: Is this a distinction that's actually present in statutes or case law? Or is this simply the desired reading of the FSF itself?
gpl
fsf
opensource
licensing
web
argument
copyright
software
wordpress
law
license
via:manuel
july 2010 by arthegall
java-twitter - Project Hosting on Google Code
july 2010 by arthegall
For when I finally getting around to creating a command-line twitter client for myself, so I don't have to reload the stupid thing in Firefox all the time.
twitter
java
api
software
library
client
programming
google
opensource
july 2010 by arthegall
Supreme Court Rules Narrowly In Bilski; Business Method & Software Patents Survive | Techdirt
june 2010 by arthegall
"In other words, business method and software patents survive." -- Bummer.
patents
software
algorithms
intellectual-property
law
legal
supreme-court
in-re-bilski
june 2010 by arthegall
OpenSCAD - The Programmers Solid 3D CAD Modeller
june 2010 by arthegall
"OpenSCAD is not an interactive modeller. Instead it is something like a 3D-compiler that reads in a script file that describes the object and renders the 3D model from this script file (see examples below). This gives you (the designer) full control over the modelling process and enables you to easily change any step in the modelling process or make designes that are defined by configurable parameters."
via:ltu
3d
software
opensource
graphics
modeling
visualization
design
cad
june 2010 by arthegall
Developers Methods | Open API | Mendeley
april 2010 by arthegall
The upcoming Menedeley API.
api
reading
science
software
web
tagging
social-networks
annotation
april 2010 by arthegall
Scholarly Ontologies Project: Knowledge Media Inst., Open U. (UK)
april 2010 by arthegall
"ClaimBlogger!" -- But their ontology ("schema") at the bottom of the page looks hand-edited and quirky and ad hoc, and has (I would guess) about a 50% chance of being incoherent. For instance, it talks about rdfs:Property, but I think they mean rdf:Property, and that leads to a bunch of other problems later on...
ontologies
research
work
blogging
software
tools
scholonto
via:paoloc
april 2010 by arthegall
Carneades
april 2010 by arthegall
"Carneades is an argument mapping application, with a graphical user interface, and a software library for building applications supporting various argumentation tasks." -- linked to from the LKIF page. The publications link is broken, but a quick search on Google Scholar reveals a couple of papers that might be worth reading.
to-read
carneades
law
argument
logic
proof
software
april 2010 by arthegall
"The Military’s PowerPoint Problem" (Yglesias)
january 2010 by arthegall
I feel like this should somehow be worked into the O&L book-club -- or at least, noted by those participating.
literacy
powerpoint
software
command
management
military
january 2010 by arthegall
related tags
3d ⊕ 4store ⊕ academia ⊕ adobe ⊕ affymetrix ⊕ agents ⊕ aggregator ⊕ agile ⊕ ai ⊕ airfare ⊕ ajax ⊕ alchemy ⊕ algebra ⊕ algorithms ⊕ alignment ⊕ alloy ⊕ amateur-bioinformatics ⊕ amazon ⊕ analysis ⊕ analyzer ⊕ andrew-mccallum ⊕ android ⊕ annotation ⊕ ant ⊕ apache ⊕ apache-license ⊕ api ⊕ app ⊕ apple ⊕ archaeology ⊕ architecture ⊕ archive ⊕ argument ⊕ art ⊕ arxiv ⊕ ascii-art ⊕ asn.1 ⊕ astronomy ⊕ atom ⊕ audio ⊕ awesome ⊕ backup ⊕ bad-metaphors ⊕ bam-file-format ⊕ bayes ⊕ bayesian-methods ⊕ benchmark ⊕ betting ⊕ bibliography ⊕ bibtex ⊕ bioinformatics ⊕ biology ⊕ blogging ⊕ blot-logic ⊕ book ⊕ broad-institute ⊕ browser ⊕ browsing ⊕ budget ⊕ bugs ⊕ build ⊕ byte-code ⊕ c ⊕ c++ ⊕ cad ⊕ canvas ⊕ carneades ⊕ cartograms ⊕ causal-networks ⊕ causality ⊕ chat ⊕ cheminformatics ⊕ chemistry ⊕ chemoinformatics ⊕ chess ⊕ childhood ⊕ chip-chip ⊕ choropleth ⊕ citations ⊕ clark-and-parsia ⊕ classification ⊕ client ⊕ cloud-computing ⊕ cloudcomputing ⊕ cluster-computing ⊕ cms ⊕ cmu ⊕ codec ⊕ collaboration ⊕ color ⊕ comics ⊕ command ⊕ commercial-software ⊕ community ⊕ compiler ⊕ computation ⊕ computational-biology ⊕ computer ⊕ computers ⊕ computerscience ⊕ computing ⊕ concurrency ⊕ conditional-random-fields ⊕ conficker ⊕ consortium ⊕ constraint-satisfaction ⊕ conversion ⊕ converter ⊕ convex-optimization ⊕ copyright ⊕ cosma-shalizi ⊕ crawling ⊕ css ⊕ dalvik ⊕ daniel-jackson ⊕ data ⊕ data-analysis ⊕ data-publishing ⊕ data-structure ⊕ database ⊕ datamining ⊕ debugging ⊕ delicious ⊕ dependencies ⊕ deployment ⊕ description-logic ⊕ design ⊕ detection ⊕ development ⊕ diplomacy ⊕ discussion ⊕ distributed ⊕ django ⊕ dna ⊕ documentation ⊕ drupal ⊕ dynamic-programming ⊕ ebi ⊕ eclipse ⊕ ecology ⊕ economics ⊕ editing ⊕ editor ⊕ education ⊕ emacs ⊕ email ⊕ empire ⊕ encryption ⊕ engineering ⊕ english ⊕ essay ⊕ etl ⊕ eula ⊕ evaluation ⊕ event-handling ⊕ examples ⊕ exhibit ⊕ expression-analysis ⊕ extension ⊕ extraction ⊕ ffmpeg ⊕ file-format ⊕ filesystem ⊕ firefox ⊕ flash ⊕ font ⊕ format ⊕ framework ⊕ frank-gehry ⊕ fraud ⊕ free ⊕ freebase ⊕ freeware ⊕ frink ⊕ fsf ⊕ functionalprogramming ⊕ fvck-you-clown ⊕ galaxy ⊕ game ⊕ games ⊕ gary-king ⊕ gears ⊕ geek ⊕ gene-expression ⊕ genetics ⊕ genomics ⊕ geocoding ⊕ geography ⊕ geometry ⊕ geotagging ⊕ gis ⊕ git ⊕ github ⊕ gnu ⊕ google ⊕ google-code ⊕ government ⊕ gpl ⊕ gps ⊕ grammar ⊕ graph ⊕ graphd ⊕ graphical-models ⊕ graphics ⊕ graphs ⊕ greg-landrum ⊕ grid-computing ⊕ hadoop ⊕ hashing ⊕ haskell ⊕ health ⊕ hells-bells ⊕ history ⊕ homepage ⊕ houdini ⊕ hpc ⊕ html ⊕ http ⊕ humor ⊕ ibm ⊕ idea ⊕ idiocy ⊕ igem ⊕ igem2010 ⊕ illumina ⊕ IM ⊕ image ⊕ image-processing ⊕ images ⊕ implementation ⊕ import ⊕ in-re-bilski ⊕ index ⊕ indexing ⊕ inference ⊕ infrastructure ⊕ ingenuity ⊕ insanity ⊕ installation ⊕ instructions ⊕ integer-programming ⊕ intellectual-property ⊕ interactive ⊕ interface ⊕ internet ⊕ interpreter ⊕ ipad ⊕ iphone ⊕ isis ⊕ ivy ⊕ jabber ⊕ james-whittaker ⊕ java ⊕ javascript ⊕ jdbc ⊕ jena ⊕ jonathan-rees ⊕ journal ⊕ jpa ⊕ jpeg ⊕ jquery ⊕ json ⊕ json-schema ⊕ jsonp ⊕ jvm ⊕ knowledge ⊕ language ⊕ latex ⊕ law ⊕ layout ⊕ legal ⊕ lemonade-stand ⊕ lgpl ⊕ libpng ⊕ library ⊕ license ⊕ license-agreements ⊕ licensing ⊕ linear-algebra ⊕ linear-programming ⊕ linguistics ⊕ linked-data ⊕ links ⊕ linux ⊕ lisp ⊕ list ⊕ literacy ⊕ loader ⊕ logic ⊕ lucene ⊕ luke ⊕ mac ⊕ machinelearning ⊕ major-mode ⊕ malware ⊕ man-page ⊕ management ⊕ manual ⊕ mapping ⊕ mapreduce ⊕ maps ⊕ markov-logic ⊕ markov-logic-networks ⊕ mars ⊕ mashup ⊕ mathematics ⊕ matlab ⊕ mcmc ⊕ mechanical-turk ⊕ media ⊕ mediawiki ⊕ medicine ⊕ memory ⊕ message-queue ⊕ metadata ⊕ metapost ⊕ microbes ⊕ microsoft ⊕ middle-layer ⊕ midi ⊕ military ⊕ milton ⊕ mindmap ⊕ mit ⊕ mobile ⊕ modeling ⊕ modeling-language ⊕ molecular-modeling ⊕ monad ⊕ money ⊕ monitoring ⊕ mork ⊕ mrsid ⊕ multi-resolution-images ⊕ multics ⊕ multitouch ⊕ music ⊕ mutations ⊕ mysql ⊕ n3 ⊕ nacl ⊕ nasa ⊕ negligence ⊕ network ⊕ networking ⊕ networks ⊕ news-article ⊕ ngs ⊕ nlp ⊕ node ⊕ notes ⊕ notetaking ⊕ npm ⊕ nyt ⊕ nytimes ⊕ objective-c ⊕ obo ⊕ ocr ⊕ odr ⊕ office ⊕ online ⊕ ontologies ⊕ ontology ⊕ open-context ⊕ open-knowledge ⊕ open-letter ⊕ open-source ⊕ opensource ⊕ operations ⊕ opinion ⊕ optimization ⊕ oracle ⊕ ordf ⊕ origami ⊕ os-x ⊕ osgi ⊕ osx ⊕ owl ⊕ oxs ⊕ package-management ⊕ paper ⊕ papers ⊕ parallel ⊕ parser ⊕ parsing ⊕ parts-of-speech ⊕ patents ⊕ pathways ⊕ pavel-pevzner ⊕ pdf ⊕ pdfs ⊕ pellet ⊕ pennyarcade ⊕ perception ⊕ perl ⊕ personal ⊕ phone ⊕ photographs ⊕ photography ⊕ photos ⊕ physics ⊕ pim ⊕ pipes ⊕ piracy ⊕ plagiarism ⊕ platform ⊕ plotting ⊕ plugin ⊕ plugins ⊕ png ⊕ polyfills ⊕ postscript ⊕ powerpoint ⊕ prediction-markets ⊕ preprocessor ⊕ presentations ⊕ privacy ⊕ probabilistic-methods ⊕ probabilistic-models ⊕ probability ⊕ productivity ⊕ programming ⊕ programminglanguage ⊕ proof ⊕ proprietary-software ⊕ protege ⊕ protein-interactions ⊕ proxy ⊕ publications ⊕ purl ⊕ python ⊕ query-language ⊕ question ⊕ questions ⊕ queue ⊕ quitting ⊕ quote ⊕ r ⊕ radio ⊕ rage-quit ⊕ rdf ⊕ rdflib ⊕ reader ⊕ reading ⊕ reasoner ⊕ recovery ⊕ reference ⊕ references ⊕ regulatory-networks ⊕ relational ⊕ rendering ⊕ repository ⊕ research ⊕ research-article ⊕ resources ⊕ ridiculous ⊕ rna-seq ⊕ rnai ⊕ rss ⊕ ruby ⊕ sampling ⊕ samtools ⊕ sat ⊕ satan ⊕ scaling ⊕ scanning ⊕ scheme ⊕ scholonto ⊕ science ⊕ screening ⊕ search ⊕ security ⊕ semantic-mediawiki ⊕ semantics ⊕ semanticweb ⊕ sequence-analysis ⊕ sequence-assembly ⊕ sequencing ⊕ server ⊕ sesame ⊕ sharing ⊕ shell ⊕ shopping ⊕ signal-processing ⊕ simile ⊕ simpsons ⊕ simulation ⊕ simulator ⊕ sketchup ⊕ skos ⊕ smalltalk ⊕ smarts ⊕ social ⊕ social-networks ⊕ socket.io ⊕ software ⊖ solr ⊕ soundfiles ⊕ source-code ⊕ source-control ⊕ sourceforge ⊕ space ⊕ sparql ⊕ speech ⊕ speech-recognition ⊕ spin-spotter ⊕ spreadsheet ⊕ spss ⊕ sql ⊕ ssh ⊕ stack-exchange ⊕ standards ⊕ stata ⊕ statistics ⊕ statnet ⊕ stochastic-grammar ⊕ stomp ⊕ storage ⊕ structure ⊕ suffix-trees ⊕ sun ⊕ supreme-court ⊕ surprise ⊕ swap ⊕ syntax ⊕ synthetic-biology ⊕ tagging ⊕ tar ⊕ technology ⊕ testing ⊕ tethering ⊕ tetrad ⊕ tex ⊕ text ⊕ text-classification ⊕ text-mining ⊕ thesis ⊕ time-series ⊕ to-read ⊕ todo ⊕ tool ⊕ tools ⊕ tophat ⊕ traffic ⊕ transcription ⊕ transcriptional-regulation ⊕ translator ⊕ triple-store ⊕ tutorial ⊕ twitter ⊕ typesetting ⊕ typography ⊕ ubuntu ⊕ ui ⊕ uima ⊕ unix ⊕ update ⊕ url ⊕ validation ⊕ validator ⊕ variation ⊕ version-control ⊕ vi ⊕ via:alanr ⊕ via:arsyed ⊕ via:bryan ⊕ via:chl ⊕ via:cshalizi ⊕ via:ed ⊕ via:johnsnavely ⊕ via:kinggary ⊕ via:ltu ⊕ via:manuel ⊕ via:marcua ⊕ via:mreid ⊕ via:nprnncbl ⊕ via:paoloc ⊕ via:pskomoroch ⊕ via:raltshuler ⊕ via:sbma44 ⊕ via:twitter ⊕ via:vaguery ⊕ via:waxy ⊕ via:yaroslavb ⊕ video ⊕ vim ⊕ virtual-machine ⊕ virtual-worlds ⊕ virtualization ⊕ virtuoso ⊕ vision ⊕ visualization ⊕ w3c ⊕ war ⊕ web ⊕ web-analytics ⊕ web2.0 ⊕ webcam ⊕ webservice ⊕ website ⊕ weird ⊕ whitehead ⊕ why-cant-you-people-stick-to-convention ⊕ wifi ⊕ wiki ⊕ wikipedia ⊕ winbugs ⊕ windows ⊕ wordpress ⊕ work ⊕ workflow ⊕ writing ⊕ xhtml ⊕ xml ⊕ xmpp ⊕ xquery ⊕ xslt ⊕ zoom ⊕Copy this bookmark: