[1203.3353] Solving Structure with Sparse, Randomly-Oriented X-ray Data
9 weeks ago by Vaguery
"Single-particle imaging experiments of biomolecules at x-ray free-electron lasers (XFELs) require processing of hundreds of thousands (or more) of images that contain very few x-rays. Each low-flux image of the diffraction pattern is produced by a single, randomly oriented particle, such as a protein. We demonstrate the feasibility of collecting data at these extremes, averaging only 2.5 photons per frame, where it seems doubtful there could be information about the state of rotation, let alone the image contrast. This is accomplished with an expectation maximization algorithm that processes the low-flux data in aggregate, and without any prior knowledge of the object or its orientation. The versatility of the method promises, more generally, to redefine what measurement scenarios can provide useful signal in the high-noise regime."
structural-biology
image-analysis
crystallography
algorithms
inverse-problems
nudge-targets
statistics
9 weeks ago by Vaguery
[1102.2359] A Phyllotactic Approach to the Structure of Collagen Fibrils
april 2011 by Vaguery
"… We examine here how the algorithm of phyllotaxis could contribute to the analysis of the structure of collagen fibrils. Such an algorithm indeed leads to organizations giving to each element of the assembly the most homogeneous and isotropic dense environment in a situation of cylindrical symmetry. The scattered intensity expected from a phyllotactic distribution of triple helices in collagen fibrils well agrees with the major features observed along the equatorial direction of their X ray patterns. Following this approach, the aggregation of triple helices in fibrils should be considered within the frame of soft condensed matter studies rather than that of molecular crystal studies."
self-assembly
nanotechnology
molecular-design
molecular-machinery
theoretical-biology
structural-biology
crystallography
condensed-matter
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april 2011 by Vaguery
related tags
algorithms ⊕ bioinformatics ⊕ condensed-matter ⊕ crystallography ⊖ data-mining ⊕ image-analysis ⊕ inverse-problems ⊕ machine-learning ⊕ molecular-design ⊕ molecular-machinery ⊕ nanotechnology ⊕ nudge-targets ⊕ pattern-discovery ⊕ protein-folding ⊕ self-assembly ⊕ statistics ⊕ structural-biology ⊕ theoretical-biology ⊕Copy this bookmark: