is a wiki backed by a git, darcs, or mercurial filestore. Pages and uploaded files can be modified either directly via the VCS’s command-line tools or through the wiki’s web interface. Pandoc is used for markup

If you need to convert files from one markup format into another, pandoc is your swiss-army knife.

The knitr package was designed to be a transparent engine for dynamic report generation with R

MathJax home page

If you need to convert files from one markup format into another, pandoc is your swiss-army knife. Pandoc can convert documents in markdown, reStructuredText, textile, HTML, DocBook, or LaTeX to

HTML formats: XHTML, HTML5, and HTML slide shows using Slidy, S5, or DZSlides.
Word processor formats: Microsoft Word docx, OpenOffice/LibreOffice ODT, OpenDocument XML
Ebooks: EPUB
Documentation formats: DocBook, GNU TexInfo, Groff man pages
TeX formats: LaTeX, ConTeXt, LaTeX Beamer slides
PDF via LaTeX
Lightweight markup formats: Markdown, reStructuredText, AsciiDoc, MediaWiki markup, Emacs Org-Mode, Textile

combining summary and correlation tables using estout